Strip ghost-collection entries from snapshot

Third CI dry-run failure: schema-apply tried to "Create migrations_applied"
and "Create positions" as Directus collections — both already exist as
raw tables created by db-init pre-schema. The conflict halts schema-apply
on a fresh CI DB.

Why these end up in the snapshot at all: `directus schema snapshot`
auto-discovers every table in the public schema, including ones owned by
db-init (positions hypertable, migrations_applied guard). It registers
them as ghost entries with no fields and no relations — just enough
metadata to make Directus aware of the table.

In local dev this never tripped because the tables existed BEFORE the
snapshot ran, and any subsequent apply was a no-op against directus_collections
which already had matching ghost rows. On a fresh CI DB the order is:
  1. db-init pre-schema → creates the tables
  2. bootstrap → installs Directus system tables (NOT the ghosts)
  3. schema-apply → tries to "Create" the ghosts → conflict → fail

Fixes:

- snapshots/schema.yaml: stripped the migrations_applied and positions
  entries (24 lines each) from the collections: section. The user
  collections remain untouched.

- scripts/schema-snapshot.sh: post-process step that filters the same
  ghost names from every future snapshot capture. Awk-based, applied
  after `docker compose cp` writes the file out. The ghost list is a
  bash array near the top of the new step — add to it when introducing
  more db-init-only tables.

Snapshot is now 105 KB → ~103 KB. The user collections, fields, and
relations are unchanged. positions and migrations_applied stay as
raw Postgres tables managed by db-init/, never registered in
directus_collections, never shown in the admin UI. That matches the
schema-as-code split: Directus owns user collections; db-init owns the
positions hypertable and the runner's guard table.

Three CI iterations to get the boot pipeline right (port collision →
ordering → ghost entries). The dry-run gate has now caught three
distinct failure modes that would have damaged stage if pushed
unguarded.

scripts/schema-snapshot.sh

@@ -152,7 +152,46 @@ if [[ "${copy_exit}" -ne 0 ]]; then
 fi
 
 # -----------------------------------------------------------------------------
-# Step 5 — Report success
+# Step 5 — Strip ghost-collection entries
+#
+# Directus's `schema snapshot` auto-discovers every table in the public schema
+# and registers it in the snapshot YAML, regardless of whether the table is
+# Directus-managed.  This includes db-init-owned tables (positions hypertable,
+# migrations_applied guard table) which we intentionally do NOT want Directus
+# to manage.
+#
+# On a fresh CI Postgres, db-init creates these tables before schema-apply
+# runs.  If the snapshot includes them, schema-apply tries to "Create" them
+# again as Directus collections — fails with "Invalid payload. Collection
+# X already exists" because the underlying table already exists from db-init.
+#
+# Filter them out post-snapshot.  Only the `collections:` section is affected
+# (these tables have no fields/relations registered in directus_fields /
+# directus_relations, so they only appear at the top of the YAML).
+#
+# Add new ghost names to this list when introducing more db-init-only tables.
+# -----------------------------------------------------------------------------
+
+GHOST_COLLECTIONS=( "migrations_applied" "positions" )
+
+log_info "stripping ghost-collection entries from snapshot"
+
+for ghost in "${GHOST_COLLECTIONS[@]}"; do
+  # awk pattern: skip the `  - collection: <ghost>` line and all its indented
+  # children (meta:, schema:, etc. — 4-space indent) until the next sibling
+  # `  - ` or top-level section header.
+  awk -v ghost="${ghost}" '
+    BEGIN { skip = 0 }
+    $0 == "  - collection: " ghost { skip = 1; next }
+    skip && /^  - / { skip = 0 }
+    skip && /^[^ ]/ { skip = 0 }
+    !skip { print }
+  ' "${HOST_SNAPSHOT_PATH}" > "${HOST_SNAPSHOT_PATH}.tmp" \
+    && mv "${HOST_SNAPSHOT_PATH}.tmp" "${HOST_SNAPSHOT_PATH}"
+done
+
+# -----------------------------------------------------------------------------
+# Step 6 — Report success
 # -----------------------------------------------------------------------------
 
 # Compute the size of the written file for the one-line success log.

snapshots/schema.yaml

@@ -158,30 +158,6 @@ collections:
       versioning: false
     schema:
       name: events
-  - collection: migrations_applied
-    meta:
-      accountability: all
-      archive_app_filter: true
-      archive_field: null
-      archive_value: null
-      collapse: open
-      collection: migrations_applied
-      color: null
-      display_template: null
-      group: null
-      hidden: false
-      icon: null
-      item_duplication_fields: null
-      note: null
-      preview_url: null
-      singleton: false
-      sort: null
-      sort_field: null
-      translations: null
-      unarchive_value: null
-      versioning: false
-    schema:
-      name: migrations_applied
   - collection: organization_devices
     meta:
       accountability: all
@@ -282,30 +258,6 @@ collections:
       versioning: false
     schema:
       name: organizations
-  - collection: positions
-    meta:
-      accountability: all
-      archive_app_filter: true
-      archive_field: null
-      archive_value: null
-      collapse: open
-      collection: positions
-      color: null
-      display_template: null
-      group: null
-      hidden: false
-      icon: null
-      item_duplication_fields: null
-      note: null
-      preview_url: null
-      singleton: false
-      sort: null
-      sort_field: null
-      translations: null
-      unarchive_value: null
-      versioning: false
-    schema:
-      name: positions
   - collection: vehicles
     meta:
       accountability: all